Similar regions between promoters of yebB
sub TTTTGCGCGACTATTGTTCGCTTTTTGTATTGTTTTTTCAAAATGAACTTGGTACAATA- hal ...........TAATGTTCGTCTTTTGTATTGACGGACGCTAGTGGGTTTGCTACACTAT ste ............AATGTTCGTCTTTTTTCTTGACAGGTCATCTTCAGGCTGATACAATA- -300 -290 -280 -270 -260 -250 sub ----GACACAGAA--ATCAAATAAGATGAATTC----GTATAATCGCGGGAATATGGCTC hal TTTTGAAAAATAA--ATCGAA-AACATCATTTC----GTATAATGGCAGGAATAGGGCCT ste ----GCCGTGGAATCATGAATATTGTTGAATTCCGTCGTATAATCCTGGGAATATGGCTC -240 -230 -220 -210 -200 sub GCAAGTCTCTACCAAGCTACCGTAAATGGCTTGACTACGTAAACATTTCTTTCGTTTGAT hal GCGAGTTTCTACCAAGCTACCGTAAATAGCTTGACTACGAAAATAAT............. ste GGGAGTTTCTACCAAGCTACCGTAAATAGCTTGACTACG..................... -190 -180 -170 -160 -150 -140 sub ATAAATAAAACACGGTTATTTATTCAAACTGAAATCCGTCTGTAGTCAGCGTCCCAAAAT hal ............................................................ ste ...AACAAAAGACGAACATTTA--CAAAGAAATGTTCGTCTTTTTTC............. -130 -120 -110 -100 -90 -80 sub GTATTGGGACGTTTTTTATTTGGCGTTTTCAGGACAGAATAAATAGCAAAGAGTGAAGGG hal .......GACGAATATTATTCGTTGTTTTTA....AAAATAAATCGAAAACA........ ste .........CGTTTTTTATTT....................................... -70 -60 -50 -40 -30 -20 sub AGTCAAATAGC hal ........... ste ........... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...