Similar regions between promoters of yfhG

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GATTTTCCCGCAAGATTTATCCAGACATCAATATGAGGAAGTTCCTGCTCCGGTGCGGCT hal ................................ATGGGTAAGTCCGTGCT........... ste ......CCGGCTAAATTAATGGCGACATCGACA....GAAGTTCCTGCT........... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCTTCCGACAGCCATTGGACATATGTCATATTTTTTTGTTCAGTTTCCCTTGCGTTTCTT hal .........................TCATTTTTTTCCATTACGATTCATTTGGAT---GT ste ..................................................TGCGCATCTT -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GATAAAATATAAACATGGTGTCCCTGGCGGGTAAGAACGCCTGTCAGATGCTGGCCGAGA hal GAAAAAATTT.................................................. ste GATAAAATGTAGATCTCATGTCCTTGTTTGGAAAAATGGCGGGCGAGCGCCTGGCCGATC -180 -170 -160 -150 -140 -130 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AAACCGGTTCCGCCCGTCATTGCGATATTCATGAACATCTCTCCTCATCGTTCTAATAAA hal ....................................ATAACTCCTGATTACTCTAATATA ste AGCCCAGTGCCGCCGTTGATGGCGATGCGCAT............................ -120 -110 -100 -90 -80 -70 sub TATACTTTACCTCATTGTAATAAAAGAAAACGCGTTTCAGGCCTGAGAAGGGAGATTAAG hal -ATACTTTGATT--TTATAAAAAAGGGAAGGGCTTTTAA..................... ste ...................ATAAAAGATAAGGGG.......................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...