Similar regions between promoters of yheI
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTATGCCAAGGAATTTGCGTGTTTATCAAACAGTTTCATATTGGCGCGGCAAACCTTTT hal ..........GGAATTTTCCCTCTATTCACACGGTTTCATCT.................. ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTTCTGTTTTCGTGAACGGTTTTTTAGGTCGGACCGCGCGCTGAAAAGCGCTGTGCGTAA hal .................................................GCTGCGCATAG ste .........TGGCGATCGGATTTTTCG................................. -240 -230 -220 -210 -200 -190 >> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CA----TATCGGTTAAAAAAGGCATGGAGCTGACGCTTCATGCCTTTTTTATATACAAAA hal CAGCTGTTTCGGTTATACAA....................TGCCTTTTTTGTTGAAGAAA ste ........................................TGTCTTTTTATTTTGCCAAA -180 -170 -160 -150 -140 -130 >>>>> sub TCTAAGGAAAGACAGGTGTATGGGATGTGAAGACAAATACAGAGGCGAGGGCAGTTCGTG hal AC............................................GAAGGCGGTTAGTG ste ........................ATTTGAAGAAAAA.....................TG -120 -110 -100 -90 -80 -70 sub CCAAACTGGATGAAAAAAGCTGCAAGGAAAAAATAGAAGGCG-GCTGATGAGG-AGATGG hal TCCGAAT--AAGAAAAAGG..............TAGAAGGCG-GTTAGTG.......... ste CCAAAATG..............CAATGAACAAATGATTCGCATGATGATGATGCAAATGG -60 -50 -40 -30 -20 -10 sub GGATAG hal ...... ste GAAT.. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...