Similar regions between promoters of yhfA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCTGCCCGTGCTGCGGTTTTCAGTTCGGATTTGATGAGTACGAGATGCAGCACGAGGAT hal ...............................TTGATTTCAACATGATGTAGCACAA.... ste ...........CGGCGTTTTTCATTT.................................. -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AACTCATATAGAGCCATCGGAAAGCATCATCGCCTATAGAAAAAACTGGCTTGCTGAAGG hal ............................................................ ste ....CATATGGGGGCTTTGGACGGCA..................AATGGATGGCTGAAGC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTGCGTCATTTTTTCTCCTGAATGCT--TCCCAAAACATCTGCAAAAAGCGAATAGAGGA hal .............TCTCCCAAAAGCCAATCCCAAAAC.TCTGCACAAAGACAAGATACGT ste TTTCA-CACCTTTTTTCCCG........................................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>> sub TTAAGGCATCATCTGATTGAGCAGCTGAAACAGATCAATGTTCATCTTCC-ATCATAACC hal TT....................................TGATAGTCTTCGTATCCTAGCT ste .............TGATTGGGCAGCGGAAACATAT...TTTTCATTTTCA-AT....... -120 -110 -100 -90 -80 -70 sub CTCCCCTCTGTCCCGGCACCTTCCGCCCGCCTATGAATAATCTGTAAGCGGAAGGAGTGA hal CTCCC....................................................... ste .....CTGTTTCCCCGCGCCTTC..................................... -60 -50 -40 -30 -20 -10 sub TCG hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...