Similar regions between promoters of yitJ

sub TATTGATTATTGTCTTTATTTTCGGTAAATTTGGAGAAAG-GGAAAAACGCCAGATATCT hal ........ATTGCTTAGACTTTCAGTCGGGTTAGAAAAACCGGAAGAAC........... ste ................TTTTTTCTTTTACTACGGAGAAAC-GG................. -300 -290 -280 -270 -260 -250 sub TTTGGCACTTCCTGACACGAAAATTTCATATCCGTTCTTATCAAGAGAAGCAGAGGGACT hal ................................................AGAAAATGAAGA ste ..................................TTCTTATCAAGAGAGGGGGAGGGACT -240 -230 -220 -210 -200 -190 sub GGCCCGACGAAGCTTCAGCAACCGGTGTAATGGCGATCAGCCATGACCAAGGTGCTAAAT hal GGCGGTTCGAAGGTTC............................................ ste GGCCCGGTGAACCCTCAGCAACC-------TGGC------CCGCGGCCAAGGTGCTAAAT -180 -170 -160 -150 -140 -130 ]]]]]]]] sub CCAGCAAGCTCGAACAGCTTGGAAGATAAGAAGAGACAAAATCACTGACAAAGTCTTCTT hal ...GAAAGGTGGAACATCTTGTCAGTTTAGGAGCGGTAGAATC................. ste CCAGACAGGCGGAA--GCCTGGAAGATAAGAAGAAGCGAA-----TGA-AAAGTCTTCTT -120 -110 -100 -90 -80 -70 ]]]] ]]]]]]] sub CTTA-AGAGGACTTTTTTTATTTCTCTTTTTTCCTTGCTGATGT--GAATAAAGGAGGCA hal ..................................TTGCTCACGTTCGAGGAAAGGTGGAA ste CTTATAGAAGGCTTTTTTCTTTT..................................... -60 -50 -40 -30 -20 -10 sub GACA hal CA.. ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...