Similar regions between promoters of yjbA

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATTTCCCGGGCTATTTATTTTAATGACCGTTTTATGCTTCAACTTTGTCGGTGATGGCC hal ...........CTATTTAT...............AGGCTACAGCTTTACTCATTATGTCC ste .......CCGCCTGTTTTTTTATTTGGTCGGTTTCGGTTTTTCGGTCGTCGGCG...... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGCGGGATGCGCTTGACCCGAAAAATATTAAATAAAAATGAATATCATATCTGTTATAAA hal T........................................................... ste ......................................TGAACATCATCACT.....AAA -240 -230 -220 -210 -200 -190 sub ATATCACCAAATCAGAAAAAAGCAGGTCTCCTTTAGTCAGAAAATATACAAAGAGATCTG hal ......................................................GAACTG ste AGAGGACGAAATGGAATAAAA....................................CTT -180 -170 -160 -150 -140 -130 sub CTTTTTATGATTCTTACATAAACCCAGTGATTCCAGATTTCCTCAATCTCTTTGGAATAA hal TATCTCATGATTCT....................................TGTGGAATAA ste CTTTTGATG..........AAGCCCGGTGATCC...................TGGAATAA -120 -110 -100 -90 -80 -70 sub TTTCTCTATCCCT-TGCCTATACTG-TGGACAACAGTTTTTTATAAAAGTGAGGGGTTAG hal ACTGGCTTCCCTC-TGACCATACTG-TTGATACAAATAACTGAGCAAAGGGGG....... ste AAT-TCTCCCCCTCTGCCTATACTGATGGACAAACACGTCTG---GAAGTGAGGGGT... -60 -50 -40 -30 -20 -10 sub AG hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...