Similar regions between promoters of yjbH
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTAGGCGGGCCTCCTCTTTATACTGAGGAACACGGCCATCCTATGCTCAGAGCAAGGCA hal TTTGGGTGGACCTTCACTATATACAGAGGAACATGGACATCCTATGTTACGAGCACGACA ste ............................GAGCATGGACACCCCATGCTGAGGGCGCGCCA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTTCCCTTTCCAATTACAAACGAGAGAGCTGATGCGTGGCTCAGCTGTATGAAGGACGC hal CTTACCTTTTCCAATCACGCCTCGTCGTGCAAAAGCTTGGCTCACATGTATGGAACGAGC ste TCTCCGCTTTGAAATCACGCCGAAGCGGGCGGAAGCGTGGCTTGCCTGCATGCGGGCAGC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AATGGACCATGTAGGGCTGGAGGGCGAAATTCGTGAGTTTTTGTTTGGCCGGCTGGAGTT hal GATGGATGAAATCAACTTGCCAAGCCCAGAGCGAGAGGAAATGATGGCACGACTAACGAT ste CATGGACGAAATCGGCTTGTCCGGGCCGGCGCGCGAACAGTTTTATCACCGGCTCGTACT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACAGCAAGGCATATGGTGAATCAAACGGAAGCGGAGGATCGATCATCTTGACAAACTAT hal GACTGCTCATCATATGGTCAACCAACCAGAGGAGCA......ATCATATGGTCAACCAAC ste CACCGCCCATCATATGGTCAAT...................GATCATCTGGACAGA.... -120 -110 -100 -90 -80 -70 sub CAGCATGAGCTATACTTCGCCCATTGCCACGGTCATCCAAAAAAACCGCTTGAAATTTAT hal CAG-AGGAGC..................ATGGTCAACCAA....ACCGCTAGAAA..... ste ........GCTACCCTT--CCCAGCCGCTAGGCAACACGAACAAACCGCTCGAGCTGTAT -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...