Similar regions between promoters of ykrA
sub ATAAGGATCTCTCAAAAAGTGAAAGATCCCTTGTCAGGCAATTGCTTTCTTAC--GGAGC hal ............................................................ ste ................................GTCAGGCGATCAATTTTTTGCCGGGTGC -300 -290 -280 -270 -260 -250 sub ATTCCGTTCCATTGTCTTCTGAGTTTCTTTCTTAATTTACGCAGCAT---TAGCCAGTCC hal ......TTGCATCCTTCACGTAATTTTTTGCGTAGTTTTTTTAACAT---AT--CATTCG ste AGGTCTTTCCAT-GTTGAAGCAGCTTTTTTTTCAGCTTTTTCAACATGTTTCATCACTCC -240 -230 -220 -210 -200 -190 sub CT-CCTTTAATGAAA---AATTTGTCCC-AGAGT---TCTTTTATACAAATAGTATACGG hal CT-CCTTT.................................TTTTAGATTTAGTATGTGT ste TTACCTTTTATTGTACTCATTTTGCGGCGAAAGTAAATGTTCTATT-ATATATGATATGT -180 -170 -160 -150 -140 sub AGATTGAGGAAGACTTTTCGTGGTTATTAATGGAATTTAATATGATTTTTGAACGAAATT hal GGATAGGGAGAAGATCACTAAGGTAATTAATGGAGT................ACGTAATT ste AGGCGGAGGTTTGTTTTTCATGGGTAAAAATGGAA.......TCATTTTGCGGCGAAAGT -130 -120 -110 -100 -90 -80 sub GTTTGCTGAATGACAATCTTTTTGTATGATGAGGGTGGGAATTGCAGACCAAGACGATAA hal TTTTGC...................................................... ste AAATGTTCTATTATATATGATATGTAGGCGGAGGTTTG.....................A -70 -60 -50 -40 -30 -20 sub AGGGGAAGTTGCG hal ............. ste AGGGGAAGT.... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...