Similar regions between promoters of yktA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTGAATTCTGGGTCCATTCCTGCCCCTTTTTTATGGCCGGGAATGTGGAATTGAACAGGC hal ................................................AATTGAACA... ste ...................CCGGCGCTTCATTTACGAAGGAAAGGTGGA.........GT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGTCTGCTTGCATGCTTTTTCAGTCCTGTGTATAAGGGTGTTTCATGTTGCGACAATTGT hal ..........................................TCATATTTTAACAATTG. ste TGTTTGCCCGCATGATT.....................................AGTTGT -240 -230 -220 -210 -200 -190 sub TTTCCCACCTTTGTAATCATACCTATGCATAATAGTGTGTATTAAAATCAGTTTCTCAAC hal ..........................................................AT ste TTGCCCGCAT...................TAAAAGAATATATTA................ -180 -170 -160 -150 -140 -130 sub CGTTTTTTAGACGTAAAACAAATGAATTATATTATGAACTTGAAAGAATGTAAAGAACAA hal CATATTTTAACAATTGAACAAACGAAT.......TGATCCGAAATGATTGGACGGATCAT ste ....TTGAAGAGGCGGAACAAAT......TATGATGAT-TTAAAAGAATATA........ -120 -110 -100 -90 -80 -70 sub TTTATGATCAAATGAAGATGCTTTCTCTTAAGGGAAGTAAATCTACAAGGAGTGAAGAAA hal ATTTTAA-CAATTGAACA.......................................... ste ............................TATTGGAAATCGAGCGCCAAGGCG........ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...