Similar regions between promoters of ykuS
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TAACAGAAGAATTTATGTCTTTTGTTGCTGAACATCAACTGGCGACAGTAATTGAAGCAA hal ...........TTTATGTTTTGGCTTGGTG..............ACGTTTATCGAATGCA ste ........GAATTTATGAAGTTTGCCAAGGCGCACGGCGGCGTGAATGTGATCCGTTGCA -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGAAGCAATGACTGGAGAGGATTTTGGCTATATGCTGAAAAAATATCCCGGATTCATGT hal GCGAAGCCATGACAGGGGAGGATTTCGGTTATTTTCTCGAAGAAATTCCTGGCTTTATGT ste AAGAAGCGATGACTGGCGAAGATTTCGGCTATATGTTGGCGGAAATTCCTGGATTTATGT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTGGCTCGGCGCTGATTCTGAACATGGGCTTCATCATGCTAAGCTGAATCCCGATGAAA hal TTTGGCTTGGTGTCGATACAAACTATGGTTTGCATGATGCTCGTTTGAATCCAAATGAGG ste TTTGGCTCGGTGTTGATTCGCCATATGGGCTGCACCATGCAAAACTGGCTCCGAACGAGG -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>> sub ATGCGATAGAAACAGCGGTTCATGTCATGACAGGTTATTTTTC-----TGTTTATGCCAA hal ATGTATTGTCATTTGCCGTCCAGCATTTAATAGGATACATCGAAACATTGTAGCAGAGAA ste AAGCGATCGACCGCGCCATCGCGTTTTTAATCGACTATTTTTC-----TTTTCATGGAAA -120 -110 -100 -90 -80 -70 >>>> sub TTAAGTACAAATGAAAGAATAAAATTCCATAAAATGAGCACTCTAGTAAACGGAGGTGTT hal ATAGATAGAAATGCATGAAAAAAA.................................... ste GGAAACGCAGAATGAAGTATA....................................... -60 -50 -40 -30 -20 -10 sub CAAAA hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...