Similar regions between promoters of ylbA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCGCGGTCGGTTACGATGCCGACCAATGTTTCCCCGTCCTCATCAACTACCGGTATCGCT hal ....................................TCTTCTTCACAAATGGGAACCGCC ste .......CGGAAACAATGGCAAACAAT..........CGTCATCGACAATCGGAATCGCC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCTACATTTGCGTCCTTCATCTTTACTGCAGCTTCATATACATTATCTAATACCGTGCAA hal CCTACGTTATCTCGCTCCATTTTTACCGCAACTTCGAAAATATTGTCATCAGGTGAACAG ste CCGACGTTGAAATCGCGCATTTTTACCGCCACTTCGTAGAGATTGTCAAGGGGCGTGCAA -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TATTGCAAGTCGGCTGTCATCAGATCTTTTATTTTTGTCATCCGTTTAACCTCCTTTA-- hal TAATCAACATCTGTCGTCATGACATCGCGAATATGTCCCATACGATTT-CCTCCTTTT-- ste TATTGCACATCCGTTGACATGACGTCCCGTACCGTTTGCATTCTTCGTCTCTCCTTTCTA -180 -170 -160 -150 -140 -130 sub ---GTCTAGTGCTAT-----TGTCGTCAAAAT--TTAATTTT--TGC-ATACTTT----- hal ---GATTGGTTCAATGTTACTGTTTGCACAACGATTGTTTTTCATAC-ATACTTTTTCCT ste CCCGTATTGTGCGCC-----GGATCACACAAA--AAAATGCG--AGCGAAACGGA----- -120 -110 -100 -90 sub ----CAAAA--GAAGAA----GATTCAT----TGAAAGTTTAAC-GCTTTCATACTATGA hal TTGTCCATA--AAACATTCATGAATCATCCGTTGCATCTTAAGC-GTATTCATACTATCA ste ----AACAATGGCAAAC----AATTCGT----TGAAAAGCAAACCGTTTTCGTACTATTA -80 -70 -60 -50 -40 sub TTG--TCAGGAAA---GGTAATTTTTATAAGGAGGGGTCA hal TTAGATGAGGAAATCTGGTCATGTTGTTAAAAAGGAG... ste T................GTACTATTATAAATGAGGGG... -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...