Similar regions between promoters of ylbF

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCAGAGAACAGCCGATATGGTACCGCAGGCTTTCAAGAAAACCGGATGATCTGTCCTCCT hal ......................................AAAAAGAAAGATTTGGCCCTCT ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>> >>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTCAGCT--TGAAATGATGA----ATTTTTATGAAAAAACCATTCCGCATCGGGTGAATC hal TTCAATTGATGAAAGATTTAGCAGAATATGATGAAATAAC.................... ste ........................................CATTCTGAATCG........ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGTTTACGAACGGGATTCAAATGGCGCAAATGATGATGCAAATGTTTCAAGCGATGCGGA hal .........................GCAGAATATGATGAAA.TCTTTCAATTGATG.... ste ........AACGGGCAAAAAATGACGGAAGT..................AGAGATGACGA -180 -170 -160 -150 -140 -130 >>>>>>>]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub CAAAAGATTAAAAGGCCCCGAAGAAGGGTCTTTTTTCATGCGGTCATAAGGTTTTGTTGG hal ...........................GCCTTTTTGCATG...................G ste CGATCGTTTAAAAGGC......GAATCGCCTTTTTT...............TTTTGTTTG -120 -110 -100 -90 -80 -70 sub CGGCTGCGGTTAAGCATTTTCCAATTGGCTGGTTTCATGGTAAACTAACAACTGGAGGTG hal CTGATGCGGTCGATCATCTTC....................................... ste CTTCT.........CCTTTTCATTTTCTTTTCGTTCATGGTATGATGGATAATGGAGGTG -60 -50 -40 -30 -20 -10 sub CATGTT hal ...... ste C..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...