Similar regions between promoters of ylbN
<<<<<<<<< <<<<<<<<<<<<<<< <<<<<<<< <<<<<<<<<<<<<<<<<<<<<<< sub CACATCCGG-TTTGCAGCTTTGCTG--TTTGGGCA--TGATAAAGGTGACCGTTATGAAA hal .ACATCGGCCTTTGCCTGTTTGCGGGCTTCCGTCAAATGATGCAAATGACCGTTATGAAA ste ...........................TTTGGAAA--TGAT.....TGGCCGCAACGAAA -300 -290 -280 -270 -260 -250 <<<<< <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GGGAT-TATATTCAACCACCAATCCGACAGCTTTCATA------TTTTTTC-CGCCTTTC hal TGGGT-TGTATTCGACAACGACACCGACGGCTTTCATAGGCGCCTCCTTTT-TGACAATT ste TGGCTGTCTATTCTATC.......CGACCGTTTTCCGA------TGTCCGCGCGCCGACC -240 -230 -220 -210 -200 sub TTGCTATGTTTAAAAACG-TATGGTACATTTGCAAATGAAAACTCTTACGCCTTATTTTT hal TTATTTTGTTGCATCCCCCTTTACGACAGTGGGA---GGAAAGTGCTACAATGACTTTCA ste GTGC-ATGTTCGGAATGG-CAT....CATTTGGAAATGA..................... -190 -180 -170 -160 -150 -140 sub GTTTTAA-GTGTATGCATAGCATATTCCGCTGTCAACGATACTTCAATGGCAGCATTATG hal ATTATCACGTTTGTCCA------AT---GATGTC-----TTTTTCATTATAGACAAGTCA ste ..................ACCGTTTTCCGATGTCCGCG.....TCAACGGCAACAT...G -130 -120 -110 -100 -90 -80 sub CTGTAAAGAAAAAATATTGACAAAAACAATCTTAAAAGCTATAATCATGTTTGTTGCTTT hal GTGTAAAGAAAAAAGGTTGACAAACAAAATAGGTAAGACTATAATTACTCTTGTTGC--- ste TTGTAAAGAAAAAACATTGACAAAACTAGAAACGAAACGTATAATTTTATTCGTTGCCT- -70 -60 -50 -40 -30 -20 sub CCTGAGGTGATACAA hal CTTGAGGTGAT.... ste --TGAGGTGAT.... -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...