Similar regions between promoters of yllA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTGAAAATGAAGAAAAGGCTTGGGAGCGGGTTCAGGCCGTTTGTGGGCAAACGAAAGAGA hal .TGAACATTATGAAA...............TTCTTGCCGTTT......AAGCGTAATAGT ste ........................................TTGGCGGAAAACGGCGGACT -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCGTTCATCAATGCTGGTTGACGTCATT-GGAGGCCGGCAGACGGAAGCTGACGCCATT hal TTGTGTGACGAATGAATTTTGCTATAATT-CAAGGC........................ ste TTCGTTTGCGGACGGTGTTCCGCGTCTTTTGGCGGGCG..................CATG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCGGATACTTATTGAAGGAAGCAAGTCTTCAAGGTCTTGATGCCGTCCACCTAGAGTTT hal ..........................TCTTTCTGATCGCAATGTTTTTTACATACATGCA ste AAAGAATACATAAGAAAGGGAG................................GAGTTT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTATATGGCAGCATCAAAGCATTGGAGCGAAATACAAACAAAGTCTTTTGAGCTTTTTCG hal TTATAAGGTCGCA.......................................CTATTTGG ste TCTTAT............................CGAGCAAGCTTTTTTTCTCTTGGCCA -120 -110 -100 -90 -80 -70 sub GTAA--CATGCTATACTCATTTCGGATCACTAACTATTTATTGGAGAAAGGAAGTTCTAG hal GTCATTCTTGCCGTTTTC-TTTCTGATCGCAATGTTTTT....GAGAAAGGACGT..... ste TAAA--CGTGCTATACTCAT........................AGAAAGGGAGTTTT.. -60 -50 -40 -30 -20 -10 sub AAG hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...