Similar regions between promoters of yneK
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CACAGTCGCCGTCAATAAAGAAACAGAAGATGGCTCTTCTTTTTCTCTTCAATTTCCTCT hal .............................ATGGATCTGACTTGTCACGTAACGTTCCGCG ste ..............................TGGCTTTTTTTTCTTTGTTTACTAGATTAG -300 -290 -280 -270 -260 -250 >>>>>>> ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] sub CAGCTAAACATAAAAA-GTCACTTTCATCCCCTATTATGAAAGTGACTTTTTTTCCGTCC hal C.............AA-GTCGCTTCCTTTCGC----ATGGATCTGACTTGT......... ste CAGGCAAAGAAGGGAACGTCACTGT..........................TTTCCATCC -240 -230 -220 -210 -200 -190 sub ATTTATCGTCAAATACCCTCTAGTGACTCTCCCATGGCCAAATAGCA-GATTCACTATAC hal ..TTATCATGAAGTAC..................TGCCGAAATTACA-GAT......... ste ATT...............................TTGCCAAACAGCAAGCTTTTCGACAT -180 -170 -160 -150 -140 -130 sub AATAGAATATGATCTACTATCTCTTTTGACTAGACGTCTATCACTTTTT-TCTATTCTTT hal ......................CTTGTCACGTAACGTTCCGCGCTTTTGCTGAATTGTGA ste AATAGTAGACGA...................................TT-TTTTTTCTTT -120 -110 -100 -90 -80 -70 sub TTTTACTGTGTTCTTCTAATCTCTCTTCGTATACAATATGGTTAGAATAAGGGGGAATGA hal TTGCACTTTGGCTTTATGCTC-CTCCACTCTTACAA........................ ste GTTTACT..................................................... -60 -50 -40 -30 -20 -10 sub TTG hal ... ste ... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...