Similar regions between promoters of ypbR
sub TTTGAAAAAGATTCTCAAT-CAGGATG--GTGAA-GCAAATGACAATGCTGTTTTTGCTT hal .TTGAGGAAGATGCT-AAT-GAGTTAGCCGTGAA-GCCAGTCAACAT............. ste TTGGGAAACGGGGCGAAATGCAGTAAA--ATGAATGTAAATGACATTG............ -300 -290 -280 -270 -260 -250 sub GGAGCGGTTTGTACATATAGTGTATTAATTGGTTTTGTATTAAAAGGAATCTCTAATAAA hal ............................................................ ste ...................................TGCAGTAAAATGAATGT........ -240 -230 -220 -210 -200 -190 ]]]]]]]] sub TCTGTTTGATGAATCTGGAACTTGTAAAAGTTGCAGATTTTCTTTTATAGAAGCTGCCGT hal ....................CTTTTAGCAACTGCAGCCTTTATT................ ste ..........................................................GT -180 -170 -160 -150 -140 -130 ]]]]]]]]] sub AATGGCGGCTTTTTTCTATTCTCCTAAAGAAATTTGGTTTATTCTTGTGTAAAATG--AA hal ............TTTTTATTAGCCGCTCCGAACAAGTATCATTCCTTTGTTCAATT--AC ste TACGGCGGGATTTTTCTTTTTTC............GGATTTTTCTTTTTTCTATTGGGAA -120 -110 -100 -90 -80 -70 sub AAGGGAATGAATTCAGATCTTTCGAAAAAGGTTCACAATTGAAACGGCACAAAGGGGTTC hal GAGCGA-TGATGGATGAACTG-CGAAAAATGTATGCAA....AACGGCTGATCGGCGTTG ste ACGGGGCGAAATGCAG................................ACAAAGGGGTT. -60 -50 -40 -30 -20 -10 sub AGACTT hal AG.... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...