Similar regions between promoters of ypfD
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGACATCGCTTTCCATTCAAGAGGTAGCTGATAAAATCCTCGAGGCTGTGGAGCAAAAGT hal ..........TTCCGCTGAAGAGGCCACTGA.....................GCAAAAGT ste ..................AAGAAGCGGCCGATTACATTATGGA................. -300 -290 -280 -270 -260 -250 >>>>>>>> ]]]]]]]]]]]] sub CCCGCTGAGGATGGCAAATGCCACTTTTTTTGA-ATTTTTCAA-CGAAGATAGAATGTTA hal C...........GGTAAATATCGCTTTTTTCGA-A.TTATAAA-CAAAGTTAGATT.TTT ste ...........................TTTTGACAGTTGTCAGTCGATGAAGGAGGGTTT -240 -230 -220 -210 -200 -190 sub TTGCTTGACAAACCTGTCCTTTTATTAGAAGTTAATACTAATAAAACTTTTTATTGATCA hal GTGATTGGGGAGCCGGTCCCGATGGAAGAGCTGAAGGAGCGTAAAGCTT........... ste TTGC..............................................TTATGGATCA -180 -170 -160 -150 -140 -130 sub TTCAAAAAACTTTTTTGGATGATTCTTTAATACATATTCGGCTAAAAGCGGGCATGTTAT hal .........CTTTTTTCGAAAAGTC................................... ste T.............................TCCTTATTTTGCCGACAGCCGGC....... -120 -110 -100 -90 -80 -70 sub ATGTTCAGCTTTCAAACCGTTTTAATTAAGCTGTGTAGGTTTGGACCAAGGAGGTTATTC hal ............................................................ ste .........................................TCGATGAAGGAGGGTTTT. -60 -50 -40 -30 -20 -10 sub AA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...