Similar regions between promoters of yphA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]] sub TTGGCTCACAGAGAGAGGGGTCAATACATCAAGCTATAGTGTGCGATAAATGATAAAAGC hal ....CTCACACTGATAGG.......................................... ste ............................................................ -300 -290 -280 -270 -260 -250 ]]]]]]]]]]]]]]]]]]]]]]]] sub CCAAAACCATATGTGGTTTGGGCTTTTTGTATTATGATTTTCGCTTTTTGAATCTTCCGT hal .................................................GAATCCTCAGG ste .........................TTTTTACTATGA...............TCCTCCGG -240 -230 -220 -210 -200 -190 sub TTTGTTCAAGGCTTGTCGCTCCGTCATAGTGAATGGACTGGTCGCGATCTGATTCGACTC hal TTTCT...AGGTTTCTCACTCGGTGATA-TGATTGG..............GAGTCGCCGC ste CGTGT-CGAGCCGAGCCGCTCCTTTATAGGAGAGGGACTGATCTCGATCTGACTCGACGC -180 -170 -160 -150 -140 -130 sub TGC-CTGAAGCTTTGAGTTTTTTCTCTTGTCTGTCTTTTCCCATGATCATACTCCTTAAT hal TGTTCTCACACTGATAGGATTTGCTCACGACTTTTTTCT..................... ste GCC-GCGATTGCTTCAGCTTTTTTTCCTGTCGATCTTTTCCCAT.......CTCCTTTAT -120 -110 -100 -90 -80 -70 sub GTGAGATCGATTGTTTAAAAAATGTGCTTGAACTCCATACTGGGAATATGGAGGAAGTAA hal ..........TTGTTTAAAAATAGCGAAAACCGCCGATACTGGGA............... ste AGGAGAGGGACTGAT............................................. -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...