Similar regions between promoters of yphE
sub AACGAAAGCCCGAAAAACAGAAGAACACCCAAGTCTTGGGATCTCCTGAAACATTTTGCC hal .................CAGAAGGGAAACCAATTC..................TTAGGCC ste .........CGGAAAAAAAGAAGAA............................TTTTGCC -300 -290 -280 -270 -260 -250 sub GATTTAGGCAATAGAGGATGCATCTGTATGCCAAGTCGCATACTATAGCATCGAAGTCCA hal GAGGCCGGCAACAAAGGCT......................................... ste GA...................................GCATACAATA............. -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]] ]] sub AGAGAGTGTTTCTTAAACGTGCAGGTGAATATAGTCAAGTTGACTGAAGCGAAGGTC-CC hal ......TGTTTCATAAAAGTGGA........................AGAAAATGAT-CC ste ...........................................CTGAAGTAAAGAAAGCC -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]] sub CCTCTTTGCTTCAGTTTTTTTGTTCTATCAATGGATGGAAAATCTGGTTGATCTTTTCCG hal TCTGCTTGTTTCA..TTTTCGCTTCGATCTATGAA............TTGATTTTCTCTT ste CCGCTTTACTTCAGCTTTTTTTTT.................ATCGGCTTGAGCTT..... -120 -110 -100 -90 -80 -70 sub GCGCTGTATATTAAAATATAATATAACGCTTATATCTTACATATCGGGGAGGCGCACGTC hal GAGACAAATTTTAAA............................................. ste ............................................................ -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...