Similar regions between promoters of ypjB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATTATACAGTCCGTATTTTCGTTTTTCATTTTGGCATCTTGCAATTGCTGCAGTCTGGAC hal .......AGGCCTTCTTGTCCTTTTTTA.TGTGGCATCTTCTTGTCGTCTCTAGCTGGAC ste ..............ATTTTCGACTGTC.................TTGCCTCCGTCACGCC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACTGCATAACGATGTCATTGACTACTTGTTTGATATGATGCCGCAATACTCTATGCTTTC hal GCTCTTGAACGATTATATTGATTAC................................... ste AAGGCGTGACG................................................. -240 -230 -220 -210 -200 -190 >>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGATTATATGA---CTGAAATAGGATACGGAACATTTTGGCTAAGTATCTTTTCAATCGC hal .GACTATGTGATTCCTGAAATTGCTATGTTTACCGTCGGGTTAAGCTTGTTTAGTATTTT ste ............................................................ -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTTGCTTACTTTCTTGT-GGTCTCAAAAAAGCAAACGAAGCTTGAGCTGATGTAAAGAC hal ATCTGTCTA-TTTCTTGTCGGTGCGGGGAAAGGCAGCGAAACGTTCACTAGAGTAA.... ste ............................................................ -120 -110 -100 -90 -80 -70 sub AATGTTGGTCTATCCTTGTCCCTTTCTTCATATTCTGTAAGGAGAGAGAGTGGGAGGGAC hal ..TTTAGGTCTACTCTTGTCCACACCTACATAGGATGGGAGTAGA---TGAAGGAGGGAC ste .....TGGTCTACTCTTGTCCACTCCTTCATACATTGTACT-AGTGGATGAGGGAGGGAC -60 -50 -40 -30 -20 -10 sub CTGC hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...