Similar regions between promoters of ypjC

sub AGCACGTTTGCTGTTTTCTTTTTCATCCACTATAATATAAA-CGCTATC-TAATGGAAGG hal ..CACGTTCCATGTTAGCTT....................A-GGCTATCATGTTGGAAGA ste .........................TCCTCTATAATTAAGGGCGCCGAC-TATTTTTGCG -300 -290 -280 -270 -260 -250 sub AAAAGGGGTTTTGTGTGATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAA hal AA.....GTTTTCTGTGA.................TTAAAAAAAAGATTTT......... ste GACGGAGGGACGGTATGATTTTTGGACTAA--AGATCAAAAA-CTGCCTGTTTATTTTGC -240 -230 -220 -210 -200 -190 sub TCGGAGCGGCAATTTTTTCATTTGGCTTGGTTCATTTCAATATGCAGAACAATCTGGCTG hal ...........................TGGTTCACTTC...................... ste TTGGCGCCGCCATTTTCGCCTTCGGGCTCGTTCATTTCAACATGCAAAACAATTTGGCGG -180 -170 -160 -150 -140 -130 sub AGGGCGGTTTTACAGGTATTACACTTTTGCTTTATGCCCTTTTCCACATCAGCCCCTCTA hal ............................................................ ste AAGGCGGGTTTACCGGCATTACGCTTCTTCTTTATTTTTTGTTCGGACTGGATCCAGCGA -120 -110 -100 -90 -80 -70 sub TATCGAACCTGGTGTTGAACATTCCGATTTTTTTTATTGGCTGGCGTTTGCTCGGCAGGA hal ........CTGTTCATACACGTTCCATGTTAGCTTACTTGCCATCGTTT........... ste TCACCAACTTGGCGCTCAACATTCCGCTCTTTTTCATCGGCTGGAAGCTGCTCGGCCG.. -60 -50 -40 -30 -20 -10 sub CA hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...