Similar regions between promoters of ypjD
sub GAGGGGCTGATGTGGAAAAGGGCATAAAGCAAAAGTGTAATACCTGTAAAACCGCCCTCA hal .......................ATAGAGAATGAGGGTAATCCCAGTAAAGCCCCCTTCT ste .......................ATAAAGAAGAAGCGTAATGCCGGTAAACCCGCCTTCC -300 -290 -280 -270 -260 -250 sub GCCAGATTGTTCTGCATATTGAAATGAACCAAGCCAAATGAAAAAATTGCCGCTCCGATT hal GCTAAATTGTTTTCCATATTAAAATAAACGAGACCGAATGAAAAAATCGCGGAGCCTAAA ste GCCAAATTGTTTTGCATGTTGAAATGAACGAGCCCGAAGGCGAAAATGGCGGCGCCAAGC -240 -230 -220 -210 -200 -190 sub AAAATAAAAAATATGTTTTTTAATCTAATTTCTCCAAGCATCACACAAAACCCCTTTTCC hal AGAATGAAAACGATGTTTTTCCATTTTAAT.........ATCCCAGTAAAGCCC----CC ste AAAATAAACAGGCAGTTTTTGA-TCT--TTAGTCCAAAAATCATACCGTCCCTCCGTCCG -180 -170 -160 -150 -140 -130 sub TTCCATTAGATAGCGTTT-ATA-TTATAGTGGATGAAAAAGAAAACAGCAAACGTGCTTA hal TTCTGCTAAATTGTTTTCCATA-TTAAAATAAACGAGACCGAATGAAAAAATCGCG..TA ste CAAAAATAGTCGGCGCCC-TTAATTATAGAGGA.................AGCGGGCGAA -120 -110 -100 -90 -80 -70 sub AACATTTGTCAAACGTATCTGAATTA-GCTAACATGTAA-GAGGATGATAGGAGGTTTCG hal AAAGTTTGTCAAAACGATGGCAAGTAAGCTAACATGGAACGTGTATGA............ ste AACATTTGTCAAATGCGCCGCTTTTC-GCTAACATGAAA-ACAGACGA............ -60 -50 -40 -30 -20 -10 sub TTCA hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...