Similar regions between promoters of yppP
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<<<< sub CAAATTCAGTGACTTTTTTAGGCCCTTGTTCACTAAGGATTCG---AAGAATGGTGAATT hal .............TATTTCTGATCATGGTATACTATGGACACAGTCAAGAA--GTGTATT ste .......................CATTTTGCTATAATCAAAGG---AAGAAACTTGA.TT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CATTCCGCGACAGCTCTTTATCTAAAATTTCATTGATTTCATTGCGTATTTGTTTAAAGA hal CGTT.......AGATCGTTATGAACAAAAGCACTTGTCGCTTTCCTTCATCGTTT..... ste GACTCAGCGACA................................................ -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTTTACGGAGTAAAGTTTCCATATCGTACATCATCTGTGTTCTTACTTTCAAATTTGTGA hal ............................................................ ste .....................................................TTTGTGA -180 -170 -160 -150 -140 -130 sub ACCTCCATTACATAAGCATATTGCTTAAAACCTATAGATTTTATTGAAAAGCAGAA---- hal .CCTCCATATCCGAAACTCAATAAAAAGAAGATCAAGATCGTTATGAACAAAAGCACTTG ste A...............CATTTTGCTATAATC........TATAATCAAAGGAAGAA---- -120 -110 -100 -90 -80 -70 sub TCATTTTCATTC-TATTTTTACATGCTATAATATAATAATACCACGTATTAACAAAGGAG hal TCGCTTTCCTTCATCGTTTTGCAT........ATAATAACATCA..TATGAACAAAAG.. ste ACTT...................TGCTATAATCAAA..........TATAATCAAAGGAA -60 -50 -40 -30 -20 -10 sub GCACCAGT hal ........ ste GAAAC... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...