Similar regions between promoters of ypvA
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGATCTCATGCTGAACAGCGAACATTTTAATCTTATTCAAAGGGCGCTTGACGCAACAGC hal .............AACAGAGAAATTTGCTACCTTCATCGA.................... ste ...........TGGTCGGTGTACATTTTAACC............................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAACGAGCTGAAGGAGCTCGGGACTGATTCGTCTCCGTCTGTGATTTCGCATGCGCAAAC hal .AAGGATCTAAAGGAG.................TCGATCTCTTATTTCTAAT........ ste ....................................................GCGCAAAC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGATTTAGAAAAAGCGGTAGAACATATTTATTCAACAGACCATCCTTTTTTATCGTCGCA hal ..ATAAAAAAGAAGCGTTTTTGCATTTT.............................GCA ste TGTTTAA....AAACTGTTTAACGGCTTTATTGAA..GATCATAATATTGTTTTGTTACT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]] sub TGTGATCAATCGTAAGTAAACTGCAAAAAACTTGGCATTGCCAAGTTTTTTATTGTATTC hal TGAGAT...................................CAGGTTTGCTATGATAT.. ste AGGGATC...............GCAACAAACTTG.....GCGAAGCTCGAAGTTGACTTC -120 -110 -100 -90 -80 -70 sub ATCAGCGGAAAATGATATTATTGGTGGTCTGAATGTCGAATAGTTGGGGGTTGGAACTAG hal .................................TCTCGTATTGGTAGCGATTG....... ste -TCGGCGGCCATCGATCATAATATTGTTTTG............................. -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...