Similar regions between promoters of yqfN

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATAAGCTGGATGATATGGCAGAGTGGGTGTCAAAAATTAAATAAAAGAACTATTTTTCTC hal ..ATGCCGCACGATGATGCAGAG...GAGTAAAAAATGAAGCGGGGGAGCTATTTCCCTC ste ATAAAGCCGATGCCATGGCGAAATGGCTCGCCGGTTTAAAATAATGGA...ATGTTTTGT -300 -290 -280 -270 -260 -250 sub ---TTTATACATTCACAGGCCGCCGAGATGTTCTCGACAGCCTTTTATTTTTGACTGCTG hal GCTTTTCTACAT................................................ ste ---TTAGTACAATAAAGGCGCGCGGTGTTG..........CCTTTGCTTTTTGGC..... -240 -230 -220 -210 -200 -190 ]]]]]]]]]]]]]] sub CGTGCAGACCCGCATCAAAAGAAATAATT-TCAAAATCA-TTTGCTTCAGCTTGGATTCC hal ............................................................ ste .........CCGGTTTAAAATAATGGATGGTGAACATCCCTTTGCTT............. -180 -170 -160 -150 -140 -130 ]]]]]]] sub GGGCTGATTTTTTATATGATAGTAAAGGAAAAAATGATTGAGAAAAGTTGTGATGACAAG hal .........................AGTAAAAAATGA....GTAAAGGTGCGATGCCA.. ste GGGATG-TTTTGTTTAGTACAATAAAGG................................ -120 -110 -100 -90 -80 -70 sub TGAACGAATTAAAATTATCTAAACGATTGCAAACAGTAGCGGAGTACATACCGAATGGAG hal .....................................................AATGAAG ste TGAACGAATTTCGCCTGTCCAAACGGCTGGAAACGGTCGCCTCATTCATTCCAAAAGGGG -60 -50 -40 -30 -20 -10 sub CGGTG hal CGGGG ste CGGTG -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...