Similar regions between promoters of yqfU

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGTTTCAGCAGCCGCATTCGTTCACTCTCATTAAAGATGTTTACATTTTTCCCGTATAAC hal ............................................................ ste .....CAGCCGCCTCCTTGCTTCTGTTCCATCATA........CATTTTTTCCGTTCCTC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AGGTTCGCTACTTCAACGGCCTGCGATCTTGTTAAGCTGATTCCGTATTGTTTTGAGTAC hal ..............AATAGTCTGTAATCTTTATAAG--GACTCCG............... ste AGGGTC.....................CTTGACAAGCTGTT................... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTCAGCAAATCATCAGCAGTAGCCTGATTAAGCCGCTGCAAAATAATTCTTTGAAATAAA hal .......................CTGATAAAAAAGATGAGAAGTATGAATTTGAAGGAA. ste ............................................................ -180 -170 -160 -150 -140 -130 <<<<< sub ATCATCGGTCATTCCACCTCCAGACTTAATGTATGGGCAAATCAGTA-AAATGTGTCAGT hal ...........................AATGGATGGAAGAAATAGTGGAAATCTTACTTT ste ............................................GGA-AAAGGCGTGTAT -120 -110 -100 -90 -80 -70 sub GTT-TAATGGTAA-AATAGATTTATAATGTATTTAAAATAGTTATTGCAGGAAAGGAGAT hal GTT-TTAGCTTGTTAATCGGTCTATAAT........AATAGGAGTTGAAGAAAA...... ste GGTATAATGGAAA-AAAACA.........................TGTACGAAACGAGTT -60 -50 -40 -30 -20 -10 sub TTT hal ... ste CTT -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...