Similar regions between promoters of yqfZ

<<<<<<<<<<<<<<<<<<<<<<<< sub CACAGAAAATTTTCCTTGCTTCATTTTGTAGATCCTCCTTTAAACTATTACATAATTATC hal CACAGAAAATTGTC...........TTGTCGAACATTTTATGACATATGAAATGATT... ste ...............................................TTGCAGCCTTATC -300 -290 -280 -270 -260 -250 sub CTAACAGATCCATTGTTCATTGTAAATAATGGAATACGAGTTTTATATTATAAAAGCCTC hal ...........................................TCTATTTTAAAAACATG ste TTTCCAAATGCCTTTCTCAT........................................ -240 -230 -220 -210 -200 -190 sub TTTTTGAT-------CTAATTTTGCACTATTTTCTATTTTCTATCTGAAGTTAATGTTTA hal GTGTTGTTGACAAGCCTAATTTAGAAGCAGTTGC-ATCCACCACTTGACGTTGA-GTCCA ste ....TCAG-------CTGACTTTGCAGCCTTATCTTTTTTCTCGCTGAAGGCGGTGTTCA -180 -170 -160 -150 -140 -130 sub GTCGAAGAAATCCTGTCAAAAAAGCGCCTGTATAAAAACCGAGCATTCGCAGTCTCTTTT hal TGCACAGAAA.................................................. ste ATCGCCAGCATCATTTCA.......................AGCCTTATCTTTCCAAATG -120 -110 -100 -90 -80 -70 sub CTTTTGTCATGAATCGAAATGGACAAGCATACTATGGTATAAAATTTCGTATGCGGGAGG hal ............................ATACTACAGAATAACCTA-CGTTGTAAGGAGG ste CCTTTCTCATGATT......GGACAAGCATAC-ATTTCATAAAAAACACAATGAGGG... -60 -50 -40 -30 -20 -10 sub AAAAGCG hal ACAAGC. ste ....... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...