Similar regions between promoters of yqhH
sub GCGCATCCGCACAAACACTCTCCAGAGTTGCGTCGAGCAAGAGTTCTTTTGCCTGAGAGA hal ............AGACGCTCTCCAGAGCTGCGTCGAGCAAGAGTCTTTTTGCCTGAGAGA ste GGGCATACTAACAAACACCCT.................AAGAGTCTTTTTGCCTGAGAGA -300 -290 -280 -270 -260 -250 sub TTCACTCCGCA-----GTTTGCTCCTTCGGCGCCTGTATCCCGAGGTTTTCGGTCAGGTC hal TTCACACCCTAATTGTGTTTGCTCCTTCGGCGC-TGCATCC------TTGCAGTC----- ste TTCGCGTTTCC-----GCTTGCTCCTTCGGCGC-TACATTCCGTAGT------------C -240 -230 -220 -210 -200 -190 sub TCTCCCCTTGCTGTCATTCGCTCATATTTTCATGCTGT---T--AT-GGA---------- hal TCTCCCCTTGCTTTCATCCGCT--TTTTATCAATCTGT---TTCAT-GAAAACAGAAAAG ste TCTCCCCTTGCCGTCATCCGCCCATCAATAAATTGTTTCCAT--ATCGGG---------- -180 -170 -160 -150 sub -----CATACTATA------GCAATATCTTACATCAAATACATACTCATATCCTACCATC hal TTGTCCATACTATATACATAGTAATGTGTTTCATGTATTACATACGTTTATCCTACCA.. ste -----CATACTA.........CAACATACCACATGCAATCTATA....TATACTACCATC -140 -130 -120 -110 -100 sub A-TCACTATATGCTGGGCAACAGCAATTTGGGCAGATTTTTCTTATATTATTCATCTTAA hal ....................................TGTTTCATGTATTA.......... ste AATCACAGTCAAA-GGGCAATAGGAAATAATCGAACTTTCATGGCAATTAGTCATAATAA -90 -80 -70 -60 -50 -40 sub GAATCGAAGAATAAGAAAGGCGGTTTCAAAGCA hal ................................. ste ................................. -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...