Similar regions between promoters of yqhN
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAAAATAAAGCGGTTGCCATTAATGAACTCATCGAAAAGCGGGTGACGATGGATGAGGCT hal .AAAATTATATTGTTGCAATAATT........................AAGGACGAGGAA ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGTAAAGCCTTTAAAGAAGGATTTGAAACAGGTCTTAACATTCATTTGGAGCCATATGAA hal GCTGAGGCATTAAAAGAGGCGATAGAA................................. ste ............................................................ -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTTCTCAGGAAGAGCTTGATTTTGTTCATCACTTGGCTGAAACAAAGTACGCTTCAGAT hal .............................................AAGGACGAGGAAGCT ste ..............GCTCGCTTTTTTCCATC................GTCTGCGGCAGAC -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>> sub GAATGGAATTATAAGCGGTAAACAGGGCTTTTGACCCGCGGAGCATCCTTGTTTTTTCAA hal GA--GGCATTAAAAGAGG....................CGTAAGATGATTGTTCTATTTG ste AAATGTAATGGGAGGGGACAAAC...GCTTTTTTCCATCGGCCCA............CAA -120 -110 -100 -90 -80 -70 sub GTTCATTAGTGTAAACTTGTAATGGTTTATAAAGTTAAGGTGCTTTTTGGGAGGGTTTCG hal GTTATCTATAGTAAAATTATATTGTTGCAATAATTT........................ ste GTGCAGTATTTTA............................................... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...