Similar regions between promoters of yqhR
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<<<<<< sub TGCTTTCCGCCAAACATAACGCCTTCCACAACAGCCTGCCCGCCGTA-AGCGGGCGGAAC hal TGTTTCCCACCAAACATGACGCCTTCAATAACGGCTTGACCACCGTA-CGCTGGCTT--- ste ..CTTGCCAGCAAACATCACCCCTTCAACGACCGCTTGGCCGCCGTATAACGGTTTCTCC -300 -290 -280 -270 -260 -250 <<< <<<<<<<<< <<< sub TTT-ATGTTTTGA-CATATTATCAACCTGCCTATTTCTTTAGGA------TTGCT--AAC hal TTC-CTGTTGTGC-CATATGTGTCACCAACCTAT--CTGCAGCAAATCATTTGCTTCAAA ste ATTGATGATTTCATCAGGCCAACA-CCAACCTATTT-TTTATGT------TT-------- -240 -230 -220 -210 -200 sub CATTTCCTTTCACTCT---ATTGTACAGGAAACACCGCTAAACCTCTAGATTGACAGGCT hal AAAATATATTCCCTCTTTTATTTTACATCAAACACACAAAAACCTCTATGTT........ ste -ATT-------ATTTT---ATTCTACAAGAAATATCCGGAAACCTCTAGGTTGA...... -190 -180 -170 -160 -150 -140 sub GAAAAAATTGCCATAGCCTTGCTTTTCCTACATGCATTATACCCGTTATTTTCAAATTTT hal ..........CCGTACGCTGGCTTTTCCT............................... ste ......................TTATTCTACAAGAAATATCC.................. -130 -120 -110 -100 -90 -80 sub ACTCGCAGCTGCCAAAAAGTGTGA--GCTTTTTTATTGACATTTCATTTTTTGGGCACAC hal .............AAAAAGGATGAATGACTATTTATAGAC........TCTTGGATATAC ste .........TTCCAAAAAATCCAT--GATTTACACAAGAGCGGTCATTTTTT........ -70 -60 -50 -40 -30 -20 sub TTT-AACTGGAGGTGCC hal TACGAACGGGAGGTGC. ste ................. -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...