Similar regions between promoters of yqkF

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATCTGTTCTTTGGCAATTGTTTTTTCTTCTAATGATTTCAT----TTCTTCATCTCCCGT hal ....................TTTTTCTGTTAATGGTCTCAACATCTTCTTCCTCTCCCTC ste AGCTTCTCTCTGCGGATTGTTTTTTCAT..........CAT----TTTTTCG-CTTCCGT -300 -290 -280 -270 -260 -250 sub TCTGTCTCTATATGA-TGCCCCATACATTTTATCATACTAGAGCAAAAGGGGGCTTCTTC hal CCTTTTGAAGGAAAAGTATACCACAAATTTTATTTTATTTGAGCAAA..........TTG ste TGT.....................ACATATCATCAT-CGATCGCGAAAGGGGGC...... -240 -230 -220 -210 -200 -190 sub GTGAAAGTGCACCGCATGCCAAAAGGTGTTGTCTTAGTCGGAAAAGCATGGGAAATTCGA hal TTGAAATTCCGTCTCCACCCCAAATGTTTCTACATCGCCG.................... ste ....................................................AAATTGGA -180 -170 -160 -150 -140 -130 sub GCGAAGTTAAAAGAGTATGGACGCACATTTCAATATGTGAAAGATTGGATCTCAAAGCCA hal .........................................................CCA ste TCGA.....................................AAATTGGATC......... -120 -110 -100 -90 -80 -70 sub TAAAAGTTGAAACTTTAGCTCCTTTATATTACGGTCAATACAAAGCCTAAAAAAGGAGTG hal TATTTGTTGAAATTCCGTCTCC...................................... ste ......TGGCAACTCAACTTCCTCCACATACAACTCAATA.................... -60 -50 -40 -30 -20 -10 sub TGCAC hal ..... ste ..... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...