Similar regions between promoters of yrhP

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CTTCATAAATTTTAGAACGGGGCACTCCGGATTTTTTGGCAACGGCATAGCCTGTTAAAG hal ............................................................ ste .......................................CATCGGAACATTCTGATAATG -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GTGATTCTTGCAATAATGCTAAATACGCTTTCGATTCATATTCTGTAAAATTGAGGTTTT hal ..GCTGCCTGCAAGATCGCTCGATAGG.....................AATCGACGCCTT ste GGG......................................................... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TTAAAATGTCTAACATATTTTCTTTCATATATCCTCCAATATAAAGAGCAATCGCTGCCT hal TTCAAATCCCTTA...............................ACATCAATGGCTGCCT ste ........TCCAGCAATTTGTCTTTC..........CACCATCAAGGGCAACGGCGG... -180 -170 -160 -150 -140 -130 sub TAGTAATCGCTATTTTAACAA-ATCATATTGATTTATTCCAAACGCATTGATACACTTTT hal GCAAGATCGCT..............................................TTG ste ........GCTATCTTCACTATATCATAT................CATCGGAACATTCTG -120 -110 -100 -90 -80 -70 sub ATAAGTAGTTACTTTTGTAGTCACTATATGATTGAGGGGATTTTTAAAGGGGGAGAGAAC hal ATAATCAATCATTATTGTA......................................... ste ATAA................TCACTATATCAT............................ -60 -50 -40 -30 -20 -10 sub A hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...