Similar regions between promoters of yrzA

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATGATCGTAGCCTCTGAACGCTTCTTTATACTGAATATCTAAACCTTGTACTGTTTGATC hal ..GATCGTCCGCTCTGAACAATTGCTTAGTTTGCTTTTTAAAAGCT.............. ste ....TCATAACCGGCAAACACGTCTCGATATTGCTCATCGTATCCTTCGACCGATCGGTC -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATAAGTTGCTGCCCAATCTTCAAAGAGAGGGATAAATTCACGGCCCATATTTGTCACACT hal .......................................................ACACC ste ATACGATTCCGCCCATTGCTCAAACAAGTCAAGAAACTCTCTGCCCATATG-GTCACACC -240 -230 -220 -210 -200 -190 sub CCATAT----TTAATAATTCCT--ATAAGTATACTATGGATTAATGATGGAACAGTTCCT hal TCTTTT----CTAAACATCCATTGATAAGTATAC.......................... ste CCAAAAAAAGTTTATAATTCCT--ATATATATAGTATGTTTTTTCGTATTGCCTGCTCTT -180 -170 -160 -150 -140 -130 sub ATAATACCACATATTCTGAAAAGCAGGTACTAAAACACTTTGTGTATTTTATGCCATCTC hal .....................................CTTAGTTTGCTTTTTAAAAGCTC ste ACTGTAGCATATGTTTT.AAAAAAAGTTTATAATTC-CTATATATATAGTATGTTTTTTC -120 -110 -100 -90 -80 -70 sub ATATTGCGCATTGACCGCAAAAAAGCTTATACTTCATATGACTTGTGAAAGCTGGAGGGT hal TACTTCTTCGTCCATCGCACCAATGAT..TGCTTAGTTTGCTTTTTAAAAGCT....... ste GTATTGC.......CCCAAAAAAAGTTTATAATTCCTAT..................... -60 -50 -40 -30 -20 -10 sub CAAGAC hal ...... ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...