Similar regions between promoters of ysmB
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAAGGGCGTTCGCAAGCCGTTGTTGAGCTTCTTAGAATGGGTGAGCTAGAGCTTTAATCC hal .....................GTTGAGCAACTTGTAAAG........AAAGCGTTAATGC ste AAGGGGCGCTCGCAAGCTGTCATTGAATTGCTTCGAATGGGCGAACTTGAACTATAAACG -300 -290 -280 -270 -260 -250 sub TTGCCGGTATTCCTTCTTTTGGAAGGAGCCGGTTATTGCTGTTTGTTTGGAACATTCGAA hal TTG..........................................TTTGAAGCTATCGAA ste ATGCCGGCTTTCCTTGTTG-GACAGCCGGCTGTTAT........................ -240 -230 -220 -210 -200 -190 sub ACCATATTTGGAATGCTGTGCAAAACGTAGGCAAGTCATAAATTAAATTTTATTTCTTGA hal AGAAGAGCTTAAACCGTTTGCACAA................................... ste ................................................TTTTTTTGTTGA -180 -170 -160 -150 -140 -130 sub TGTTGTTTGACTAAAGTCCTCTATTTCTCTCCTGCGAGTCTTGCATTTTCTTCAAAAAAG hal ..................................CGAACCTTGCAATTCCTATAAAAAAC ste TTATCTTTGCC................................................. -120 -110 -100 -90 -80 -70 sub AAGGAAAATAGACACGGAACGCTTTTGTGCGTAAGAGATCCTTGAGTGAGGGATGGACAA hal AGCGAAAATATA................................................ ste ............................GCGGAAACGATCAAGGAGAGATGG........ -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...