Similar regions between promoters of ythA
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AGAGGTGCTTAGAAAACGGTAGCCGCTGTTGACATCCTGAAATATCACTTTGTGGTTCTT hal ...............................................CCTTGTAGCTATT ste .....................................TGAAATACAACCGCCTGCCTCTT -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<< <<<<<<<< sub TGGATGAATTCCT--TCTTTCATGGGTATCTCCTTTCAATAAATCGTAATAATTACGTTT hal CCGTAGGCTTCATAATGTTTCATGGGGAT........................TCCGCTT ste TCGAT....................................................... -240 -230 -220 -210 -200 -190 sub TATTTTATAACCTTACAAACGTTTTGTCAATCTTCTTATATCCTTCCCTCTGTTTCACAT hal CTTTTTCCAACCTCATGCATAGTTTACCAACCTT.......................... ste .......................................ATCCTTCCCT........... -180 -170 -160 -150 -140 -130 sub CGTAAACCTCATGGCATTTAAGAATAGGAAGAATAATCTAACCGAGGAAGCAAATAAT-- hal ....AACCTCATG.....TAAGAA-AGGAAGA............................ ste ...............................................AAAGAAAAAATGG -120 -110 -100 -90 -80 -70 sub AAACCCAAAATACATACAGAACGTCTTTTTGGAAAGGTGGTTTACGATTGTGGATGATTT hal ......................GTTTTTTTGCAATGGT...................... ste AAAACCATAAGAAAAAAGAAAGGGATGTTGTGAAA--TGGATGACG.............. -60 -50 -40 -30 -20 -10 sub AGTT hal .... ste .... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...