Similar regions between promoters of ytlP
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TGATAAGCGGCTCTGTCTTTCACACTGCCGCTCGGATTGAAAAATTCAAGCTTTAAATAG hal ...............TCTTTTACGCTCCCACTTGGGTTAAACATCTCCATTTTCAAATAA ste ..............GTTTTGCGCGCTGGCGGGCGGAT....................... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ACTTGTGCCGCATTTTCCGGCTGAAGCCGATTCAATCTCACTAGCGGTGTATCTCCTATC hal ACGGCAGCTCCCTTTGGGTTCGGCAAGCGATTAAGCCGAACCAAAGGTGTGTCACCGATG ste ....................CCGACGGCGCTTCAATAT...................... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AGATCAGCTGTGTTTGCAACGATTTTCAACAT-TGTCATTCCTTTCTGAATAAAACAAGT hal AGCTCGGCAATATTATTTACGATCTTCATGTTGTGTCCCTTCCTTCTTA........... ste ........TGTGTATGTAACGA................TTGGTTTGTGTATGTAACGACG -180 -170 -160 -150 -140 -130 sub GTCATATAATATCCTAACATAATAAACGTTTGTGCGAGAGTGTTTTCATACACTGTTCCT hal ..........................................TCTTCATGTTGTGTCCCT ste GTCGTCCAA...................TATTTGCTTGAGCGTTGGCAGA.......... -120 -110 -100 -90 -80 -70 sub CTATCCGCACAGCCTCTTTATTGATAAAATAATAGCTGTCAAAGAAGGGAGTGTCAGACG hal TCCTTCTTACACCTTTTTCTTTCCTAA.............AACCAAAGGTGTGTCA.... ste ............................................................ -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...