Similar regions between promoters of ytoP

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCGGGCCCCGCTGCTTAAAAGCAGATTTTACAATTCGAAGCGCTTTTTCTGAAGAAATAT hal .........................TTTTGCTAATTTTAACGCTCGTTCCGGTGAAA... ste .........................TTTGGCCATGGCCAGCGCTTGTTCCGGAGAAAGA. -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AAGGCTTCATCACATATTGTCTCACAACGACAGCCGTACAAATTCCAAGTCCTGCTCCTA hal ..............................CATCCTTACAATTT................ ste .......CATCAAGTATTCCCTC..................................... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<< sub AAAGAAGATGACGCAATTTCAAAATAAAGCACCTCCTGGTTGATCGTACTTTTCATTATA hal ............................................CTTACAATTTATTATA ste ...........CGCTTGTTCCGGAGAAAGAAGCGCCGGTTTG.................. -180 -170 -160 -150 -140 -130 sub CAGAAACAGCCAAATCCTGTTAAGCAATACGCGGCTGATCGAGCAGATTGGGTCAGAGTG hal CCCAA.................................................AGATTG ste .......ACCCGAATCGAGTTGAGAA...CGGAGCGGATCGCATAGATGGCGGCCGCG.. -120 -110 -100 -90 -80 -70 sub CTTGGAAAACTTCATTGTTTCTAATAAAATAAAAGGACTACATAGAAATGAGGGGAAAAC hal ATTGAACAGTTGGTAAGCTTTCGCTAGAATATAGAGGGTACATA................ ste ............CATTTTTTCCAA.AACATGTAAGGAGAACAAAG............... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...