Similar regions between promoters of ytsC
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCGTATTTTTGATAAAGGGTTTACATCCAC---AACGGATCACCATGATCAAGCGTCAAC hal ...............AGGTTTTACTTCAACGAAAACCGATCAA-ACGA--ATGGGGCAAC ste GCGCATTTTCGAGAAAGGATTCACCTCCAC---CACCGAACACCAAAATGAAGCGGCGAC -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGGCATGGGGCTGTACTTGGCAAAAAAAGCAGCGGCGCCGTTATTGATCCATATTGATGT hal GGGGATGGGGCTATACTTAGCCAAAAGAGTCGCCGAACCATTATTGATTGACCTAGCCGT ste GGGGATGGGGCTGTATTTGGCGAAAAAAGCCGCCAAACCGCTTCTTCTTGACTTTCATGT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TGAGTCGGAGTTTGGTGCGGGAACAGTTTTTACATTAACCTTTCCAATACGGAATCAATT hal AAGCTCAACAGTAGGTGAAGGCACAACATTCACCTTGACCTTCCCGAAAGAAAATGAGTT ste CGAATCCACGCCCGGGCGCGGAACGACATTTACGATCATATTTCCGCAAGAAAATGACAT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>> sub TGAACATGTCATAAGCGTGTGACGAAAATGTCACATGCTTTTCTTT-TTTGTTCGCCGTA hal TGTCCGCACGCTCGGCATGTGACAAAAGTGTCACATGCTTTTATCTGTTTGTTCGTTTAA ste CATCCGCACGCACCGCATGTGACGATTTTGTCACACGCGGTTTCGT-TTTGTTCGGCCAA -120 -110 -100 -90 -80 -70 sub TCGAAGGAAAAGCCCGGC---ATTCCTTTTTATAATGAGATTATCCAATATAAAGGAGAC hal TCGAAGGAAAAAAACATG---GAACCCTTTTATGATAA...................... ste ACGCAGGAAAAAACCAACCCCATTGCTTATGATA.......................... -60 -50 -40 -30 -20 -10 sub TGCGTAA hal ....... ste ....... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...