Similar regions between promoters of ytzC

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CATCCCGATTTGGACAGTCAAAACCGCCGTCAAGCGCTACTTTAAACACCTTATGGCCGA hal ....CCTTTTTAGACGATAAAAA..................................... ste ..................CTAAAGCCTCGCCATCCTCTAC...AAAAACTTCATGG.... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub AATGTTCTCTGAGATGATAATTCAATGTATGATAGCGTTTTTCCGTATTTGAATAAGGAA hal .....................................TTTTTACGTGTTTCA........ ste ..........................GGATGCCATCGCTTTTCCCTA............. -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<< sub AAGGATTGTTCTGCATCACAATTCATGTGCCTCCTTGCGTACGATTGCATCCTAAAATTG hal ...............................................CATTCTACGATGG ste ..........................GTCCCTCCTTGTGATCG-TTTCATCGTTTACGT- -180 -170 -160 -150 -140 -130 sub TAGCACGCATTTCAC--AAGAGAACAAATGAATATCGACCATAAATTACTTTATTGAATA hal CTG-ACGCAATTCAATTAGCAAAGCAGGCGAATGTGGATCATCTAATTCTTACCCACATT ste TGGCAGGCGTGTCGC............................AAAAACTTCATGGAAAA -120 -110 -100 -90 -80 -70 sub AAGTCAGATGAGGCTACAATATGAATGATGGATGATTTCCATTACCAAGAGGAGGGGTTA hal AGCTCCCGTTA--CCATGATATGAGTGATGAA....TCCCGTTACCATGA.......... ste TCGACCGCTG.................................................. -60 -50 -40 -30 -20 -10 sub CT hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...