Similar regions between promoters of yueE
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AGGAAGCCTTCGCAGTCCGGACTTTATTGCCGGCACGCTGCTTTCTTTACTAGAAAAAGG hal ........................................CTCTATATAATAGAAAAA.. ste .....................CGTTCTGGCCGGCGCTCACCTT..........AAAAAGG -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>]]]]]]]]]]]]]]]]] sub GACGGAAAACGGCCGCATTTATGATATTAAAGAGTTTTTGTAGAGCAGATATTTTCTGCT hal .................TTCATCTTTTTAAAAAGT..........CACTTTTTTTATGTT ste AACG...............................................TGTTCTGCT -240 -230 -220 -210 -200 -190 ] sub CTTTTTTTTATACAAAAGGCTGCAGCCAGCGCATTTTATTGAACAGCCGCATATACTGAC hal CATTTATTT................................................... ste CGATCACAAATGCAAAA........................................... -180 -170 -160 -150 -140 -130 sub TGAAACGTTGCTTTTAGGGTATAACAATGATGATAAGAAGATCAAAATGATGTGACATAA hal .................................TAAAAAG-TGAAAAAGATGTTGCA... ste ..........................ATGATGGTGAGAAATACAAAA............. -120 -110 -100 -90 -80 -70 sub GAATTGAGTTTCTCTGCAAATTATGTTAGGATTCTAA-AAATATCTAAA--GGAGGGGTT hal .................ACATCGTGTTAGGA----AG-AAAAATACAAA--GGAGGG... ste ..ATTGCCTGACTCTTTACGCCATGGTATGATGGTGAGAAATACAAAAAACGGAGGGGAT -60 -50 -40 -30 -20 -10 sub TCC hal ... ste GCC -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...