Similar regions between promoters of yueJ
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CTTTTGATTAATGGAGAGCTTCAGTATCAGTCTTACTCTTCTTATATCCAAATGGCGAGC hal .............GAGAGCTT...............TTTTCTCCTATCC--ATCGCGAAC ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub CGGTACGGAGTGCCTTTCAAGATTGTATCTGATCTCCAGTTTCATACGCCCTTAGGCATC hal C......................................TTTCCTATGCCCCT....... ste .................CAAAATCGAAGTTGATTTCCA................GGATTC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GTCATTGCGGCTGATATCGCTGTGAATCGTGAATTGATATATATTCAGGACGACATTTAT hal .................................TTCATTTATTTGCAGGTCAAAA....T ste GTTGTTTCATCTGATGT.........................ATTCAGGTGGTTATTTAT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]]]]]]]]]]]]]]]]]]] sub AATCGGTCAGTACTGAAATCGTAAGAGACAAACGGACCGTTTGTCTTTTTGTTCATGGCA hal AAGCGGTCAAT...........................................ATGGAG ste AAC--GCCCGTAATGAA.....AAGAGAAAAAGGGA........................ -120 -110 -100 -90 -80 -70 sub ATTCACTTACAA-CTGGAGATAAGATATAATGTTCTCATACTGATGGCGGGGAGGCCGGC hal TTTCATTTATTTGCAGGTCAAAAGA-AGGATTTTCTCCTATCCATCGCG........... ste ..................GCTATGGTATAATGAT.......................... -60 -50 -40 -30 -20 -10 sub T hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...