Similar regions between promoters of yugN
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTCATCCACTCCTTTCTTCTCATTGGTTTGCCGCTTGCCCTTTTTACCGATGCGGTACA hal ................................CGCTTGCTCTATCGCTTGATGTGCTTC- ste ............................TTGCTCCCTGCCGTTTTTCGCCAAGCG..... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCGGATTTTGCATTTAAAACGAACCCATACTCTTTTCACTAAATTAGGACTCTATGCAAC hal -CGGTTGGTTCATTTAAA...................................ATCAAAC ste ...............AAAAAGCGCCTCTTCCCTTTT...................GAAAC -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>> sub GGTTGTTTATGTGTCTTGGGATTCAGCTGTATGGCTTGCAGCGGCAATG-GCTGTTTACT hal GTTTGTTTAAG..............GCTCTATCGCTTGATGTGCTTCCG-GTTGGTT-CA ste GGTTG..............................TTCCATCGCCAAGCCGCTGTTTTCT -180 -170 -160 -150 -140 -130 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTTAATTGAATGCGCTTTCTTTCCTGTTGGCCGCGCGAAAGAAACAACGATTTCCATGT hal TTTAAATT.............TTCCGGTTGG...................ATTGCCTTGT ste .........AAAGCGCCT-CTTCCCTTTTG.........AAATAACAACGTGTTCCATCG -120 -110 -100 -90 -80 -70 >> sub AGGCGCCTCTGAATGAAGTCTTGTTCGGCGGGACAGGATAAGTGAAAAAAGGGGCATTCT hal ATGCG..............CTAGTATGGCCGGAAATGAAAGGAGTATGTATGGG...... ste CCAAGCCGCTG.................CGGGAAACGATAAAAGAAAGGAGGG....... -60 -50 -40 -30 -20 -10 sub G hal . ste . -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...