Similar regions between promoters of yurY
sub TTGGATACGAGGAATATGGACGCCGGCTGGAAACAAGAATGAAAGTAGAGCGGCAGAGAG hal ............................................................ ste ..............................AAATTATAATGAGAATAAACTGAGAATGAG -300 -290 -280 -270 -260 -250 sub AGCTTGATTATGAAAAAAGCAAGCGGATTTCTGCGGGAGCTTATTGAGAAAATCAATCTT hal ............................................................ ste CGATCGCT-AGAAGACAAGCGAGCGAACT............................... -240 -230 -220 -210 -200 -190 sub TTAAAAAAGGGTGGGAATCCACTCTTTTTCTTTTTCAATCGCTTTAATAAAGTGCTGATC hal ............................................TCATGAAGTGAAGAAA ste .........................TTTTTTTTTGCAAAAACTCGTACAAGCTTGAGGTT -180 -170 -160 -150 -140 -130 sub TTTGT-TAAACTTGAGGAATGTGCAAGGCACGATAAAA--AGTTGTATTTACTTTTCATT hal TTTGT-T....................GAAAGATTAAACGAGTTGTCTTGAAGTTTAATT ste TTCGTGTAAAATAGTAAAAGGCGC...........AAA--AGTTGCAGGCAGTTTTCATT -120 -110 -100 -90 -80 -70 sub TG-----TTATAAAATTAGAATGAGAATAAAATGAGAATAATGATTATATATTT-TTGGA hal GGATATATTATAAGATTGTAATGAGAATAAATTGAGAATGATTTTTAAATATTTATTGGA ste TG-----TTATAAAATTATAATGAGAATAAACTGAGAATGA................... -60 -50 -40 -30 -20 -10 sub GGTATAGAT hal GGT...... ste ......... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...