Similar regions between promoters of yutH
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< <<<<<<<< sub GCGTGCATTCATCAATGGTTAAATCCGGATGATATTTTTTCTGCAGAAA---AAAGACAA hal ..................TCAAATCAGAGTGGTACGGGCCTTGTAAAAA---ATGAACTA ste ........TCATCGATGG...................TTTCGGCAAAAAGGAAAAAGGAG -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub GCTCGGCAATGTCTGATACCTCAACGCCGCGCTCCTTCATCCGTGCTCTTGCTTTAGCTT hal GTTCAGCAATATCATCAACCGTTACCCCGCGCTGCTTTAACCATTCCAAGGCTTTGCGTT ste GCGCGGCGATG.......................CTTTTTCCGCGGCCATGCGCTGGCT. -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub CCATCTGACTGAATTGTTCGTTTTCTGACATCAGCTTCACCCAATCTTTTTTACTAGTTT hal CAACC....................................CAAGCTCTTTGCTTTGTTT ste .................TCGTTTTCT........................TGACTGGTTT -180 -170 -160 -150 -140 -130 sub ATACAAAATGCTTGAGAAGTTTACGACTTTTTCTTGCGCCTTCTTCGGATTAAAATATGT hal A..................TTAACGAATTGGTCAAGCTCTTTGCTTTGTTTA........ ste CGGCAAAAAG..TAAAAAGTAGCCCTCTTTTTC...................ATATATGT -120 -110 -100 -90 -80 -70 sub AT----TCATAATTCCGGCTGTGTAT-GACTACGATGTGATGAGCCCTAATTCAACAGGC hal .................GCTTTGTTTAGTCTACGA-GCGAAGAACACTTTTT........ ste ATCATGTCATAAATCAGTCCGT..........CGATGAGATGA................. -60 -50 -40 -30 -20 -10 sub AGGTGATC hal ........ ste ........ -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...