Similar regions between promoters of yutL

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TATCAGTTTCGCGTTATGCGGATTCGCCAATTTTTCATCAATTGCGATTATGCTTGGTAC hal ...........CGTTATGGATGTAATCCCATTTGAAAACACATGGCCGTATG........ ste ........................................ATTCCCATTGTGCT...... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCTTGGCGGTTTAGCGCCCAGCCGCCGTTCAGATATCGCACGTCTCGGCCTGAAGGCTGT hal ............................................................ ste ................CCCAGCCGTGGCCGCGA-AGCGCACC-CTAGGTCTGTAAGATAT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TCTTGCAGGAACATTAGCCAATCTGCTCAGCGCAGCCATTGCCGGCATGTTTATATAAAC hal ..................................................TTAAAGTATC ste CC...............CCATTGTGCTCAGCCCAGCCGTGGCCG................ -180 -170 -160 -150 -140 -130 ]]]]]]]]]]]]]]]]]]]]]]]] sub GATAAAAGCTCCTTGCGTCAGTGCAAGGAGCTTTTATGTATGAAAAACGGGGGATAATTG hal GATCAACCTTCCTTGTT---GTCGGGGGAGACTAACAGTACTAGAAGCCGATGATGATTA ste ......................................TATGAAAAACGGGGGATATTCC -120 -110 -100 -90 -80 -70 sub TATTGTG-TCCGCTTATAATAGCTTTTATAC-TAAGAAAAAGAAAAAAAGTT--GGAGGC hal T-TTGTG-GACG....................TAAATCACAGAAAAAAAGTG--G..... ste CATTGTGCTCAGGAGATGCC-GCCATTATACATGCGAAGCGCAAAAAATGTTCAGGAGGG -60 -50 -40 -30 -20 -10 sub ACCT hal .... ste A... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...