Similar regions between promoters of yvaB
>>>>>>>>>>>>>>>>>>>>>>>>>>> >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTTTTTGAACAGGCTGAGCAATCCTTT-ATCATGAAAAGGATGCCTGCGGATATTCAAGT hal .....TAAACAACAAGTGGAATCCTTTGATCAACTAAA...................... ste .........................TC-ATCACGAAAGGGA................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GCCGCATGTCCCTCATTATCCTCGGATCAGTAAAGAATTGTCCGCGCTGTATTCCGGCTT hal .........................................................CTT ste .....................TCGGACCTTTATATAATTATC.....TGTATGCCGCTTG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>> sub GAGAACAGCTTTTGAAAAGTAAGCTGTTTGGGAAAGTTAAATAAT---CTTTAATTCGAG hal GATGACAGCTTT..................GGATAGTGTAAAAAA---ATTATTTTGGAG ste GACAA....................GTTTCGGACCTTTATATAATTATCTTTTGTTGGAG -180 -170 -160 -150 -140 -130 sub ATGTTTTACTTGAAAGTAAATTTCTTTGTCTCTATAATAAAGTCTAAGAGAGACAGAATA hal TGCTTTTA..TGTAAAAAAATTATTTTG.......................GACACAATA ste ATATTTGAATTCAAA--ACAATTGTATGCCGCTTGGACAAAG.................. -120 -110 -100 -90 -80 -70 sub ATCATTA-TGCATCTGTATGATAATAATTGAT-GTGTGATTTTTAAAAACGAAAGGGCTG hal TTATTTAGTACCATTGTACCTTAATAAAGGATAGTGTAA....TAAACAAGAAAAGG-TG ste ..........CCTTTATATAATTATCTTTTGT-TGGAGATATTTGAATTCAAAA...... -60 -50 -40 -30 -20 -10 sub GTAAAA hal GAAAAA ste ...... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...