Similar regions between promoters of yvcI

sub GTTTCACATTACGTTACTGGGTTTTAATTCCGCTGTAACACATGTGTAATGCTTTTCGGT hal ..........ACGTAACTCCGTTTTAATCCGATTGTAACAGTTGTGAAATAAAGAGGGCG ste ...........................................GCGCAACACATTTGTCG -300 -290 -280 -270 -260 -250 sub TATGAT-TAATA-AAGTAATTGACCCCCTTTTTATAATGAATACACTTTTTTGGCACGGA hal TATGAT-AAAGGTAAGTAATTGACCCCCTTTTT----TATATA-----TTTTTGCACGGG ste TATGCTATAAGT-AAGTAATTGACCCCCTTTT-ATATAGAT----CCTTTTTGGTGCGGG -240 -230 -220 -210 -200 -190 sub TTCTCCAGTTATCCGTGTCCTTTTTTTGTCCATAAATAAAAGAGAATTCCAGTTACAGCA hal ----CCTTGTGTCCGTGCCCTTTTTTTATCTATTCACAA..................... ste -----CGTTTGTCCGCGTCTCTTTTTTCT............................... -180 -170 -160 -150 -140 -130 sub AAATCATCTGAATTAAGGAATGAATATGCTGTAAAATAGAAGAAAAGATTGTCAATGTCT hal ..........AGTTGTGAAATAAAGAGGGCGTATGATAAAGGTAA............... ste ..........AAGTAAGTAATTGACCCCCTTTTATATAGA......GTTTGTCCGCGTCT -120 -110 -100 -90 -80 -70 sub CTTCATTGTGGGAGGCATCTTGAAGCGGTATAATAAAGAGACGATGACAGGACGAAGGTT hal .......................AGTTGTGAAATAAAGAG.................... ste CTTTTTTCT.................GGTAAAATAAAAA..................... -60 -50 -40 -30 -20 -10 sub AG hal .. ste .. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...