Similar regions between promoters of yvdF
>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub TTACCGGGAATGACGGTGTGTTTCTTGATCGCATCTCCTCGCCGCGCTTGACTACGGTCA hal .....................TTCCTATCCTCATCTCCTAGGC................. ste ............................................................ -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub GACAGCCTGTTGTTGAAATGGGGGAAGCCTGTGCGAAAATGTTGCTGAAAAAAATGAATG hal .....................GGAAATCGTTTGC-ACAACCTACGAGAAAAAAATGAA.. ste .................ATAAGGCAAACGTTTGCGCAAATAAGTTTTAATCCTTTCTATG -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub AAGACGGCGCTGCACAAGGAAGTCTATTTTTTGAACCAGAGTTAATTGTACGAGAATCAA hal .......................CTATTTTTT............................ ste AAAACG...................................................... -180 -170 -160 -150 -140 -130 >>>>>>>> sub CGCTGTAAGCGCCTTATTCTGTTATCGGTAACAGGGTGAAAAGGATTGTTCC-CACAATT hal ................................AGGCTGAAAAGTA............... ste ....................................TGAAAACGATTGCACCACTCATCT -120 -110 -100 -90 -80 -70 sub TCATCATGATAC-----TTTCAAACTATGAGCCGGCTT--CAATAAAACGGAAATCAAAG hal ........AGAC-----TGTAAACGTTTAAGCAAGCTT...................... ste CCATTATAACGCCTATTTTTCATTTTACAAGCCTTTTTTTCTATAAAACAGATAACAAAG -60 -50 -40 -30 -20 -10 sub GGGGAAAC hal ........ ste GAGGAAA. -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...