Similar regions between promoters of yvgZ

<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCTGGAAAATCCCGTTTCACTTCTTCTGTCCGTGATGTCATGATTTTGCTGATTTGATAT hal ...............................................GCTGATTTGACCT ste .........TCCTGTTTCAATTGT.................................... -300 -290 -280 -270 -260 -250 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub TCATCCAGAACATCCAGCAGCGGCCCGTGAAAAACAGAACCGGACAATCCGTATCCTAAT hal TGCTTGGGGATGACTTGCATCGG..........................CGTTTCCAAAT ste ...TACAGGACATCC................................TCCGTTTCCT... -240 -230 -220 -210 -200 -190 <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< sub ATTCCAACCTTGATCGTATCCACTTTTCTTCTCCCCTTTAAAAGCGTTATCAACAGAAGT hal TAAATAATATTGATAG..........................AGCGTTTCCAAATTAAAT ste ............................................................ -180 -170 -160 -150 -140 -130 sub ATATACCCTCCTGATCAAATGGTAAAACCTAACTGATTCATTTTTTGCGTCGGCATGCTT hal A..................................ATTTATTTTTTGCTT.......... ste ................................CTGTTTCAATTGTGGCCACGCCTTGTTT -120 -110 -100 -90 -80 -70 sub AGACAACCGTTTGGACAATCAGTATAATGGGAATTAATATCATTAAACAGAGGTGTACGC hal ............................................................ ste TG..AACCGTTTGGA...................TAATGTAATTAAA-AGAGGTG..... -60 -50 -40 -30 -20 -10 -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...