Similar regions between promoters of yvjB

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ACGTCATCGGATGGGTCGTTCCAAAGGTTCAAGGATCATTTGTCTCTCTTCTTCCTTATA hal .......................................TTTTCTTTCTTTTTCCT.... ste .......CGGAAGGGATGTTCATTTGCTTCACTGA......................... -300 -290 -280 -270 -260 -250 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> sub ATCCATTTGTATTCCAAGTTTCGCTAGTGCTGATTGCAATCGGCGCAGTAATTGGAGTAT hal .......................CTAGTGCTG...........................T ste ...................................GCAAGCGGTGGGGAAGGTCAAGCAT -240 -230 -220 -210 -200 -190 >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> ]]]]]]] ]] sub GGGGAAGTCTGACTTCCATCCGCAAGTTTCTGCGAGTATAAAGTGAAAAAGCCGTTC-CG hal GGGGAAGTTCGA......................AGTAAAACGTTAAA............ ste AGGG...........................GCGAGGAGAAAGTGCAAAAGCCGTCAGCG -180 -170 -160 -150 -140 -130 ]]]] ]]]]]]]]] sub TTTT--CGGGACGGCTTTTCATTTGCCTTCTTTTTCTTCTATGATTACATGAAATCTCCA hal .......................TGTCTTCTTTTCTTTCTTT.................. ste TTGGGGCGGAAGGGATGTTCATTTGCTT................................ -120 -110 -100 -90 -80 -70 sub TCCTTTACATATACTATCTCTAGGTTTTGGTAAAGACAGTCTGGCATACAG-GAGGAGTA hal ............................................................ ste ............................GGTGGGGAAGGTCAAGCATAGGGTGAGGAGGA -60 -50 -40 -30 -20 -10 sub AAGG hal .... ste A... -1 > : other CDS - : gaps within a similar region ] : terminator . : gaps between similar regions } : RNAs @ : known binding sites <,[,{ : opposite direction About alignment...